Laetiporus zonatus: an addition to edible polypore fungi in Pakistan

Authors

  • Shahid Hussain Department of Botany, University of Malakand, Chakdara Dir Lower-18800, Khyber Pakhtunkhwa, Pakistan
  • Mohammad Nisar Department of Botany, University of Malakand, Chakdara Dir Lower-18800, Khyber Pakhtunkhwa, Pakistan
  • Hassan Sher Center for Plant Sciences and Biodiversity, University of Swat, Swat, Khyber Pakhtunkhwa, Khyber Pakhtunkhwa, Pakistan
  • Muhammad Zahoor Department of Biochemistry, University of Malakand, Chakdara Dir Lower-18800, Khyber Pakhtunkhwa, Pakistan
  • Nausheen Nazir Department of Biochemistrty, University of Malakand, Chakdara Dir Lower-18800, Khyber Pakhtunkhwa, Pakistan

DOI:

https://doi.org/10.6092/issn.2531-7342/16437

Keywords:

phylogeny, morphometrics, Laetiporus zonatus, edible mushroom, brown rot

Abstract

Laetiporus is a cosmopolitan genus of the "Antrodia clade" in the order Polyporales that causes brown rot in many hardwood trees and some conifers. In the current study, we examined specimens of Laetiporus zonatus collected from Quercus semecarpifolia (Fagaceae) at three different localities in the district Swat, KP, Pakistan. The specimen’s identity was determined through extensive morphoanatomical examination and molecular characterization. For reconstruction of the phylogenetic relationships of the species, the study applied three methods: maximum parsimony (MP), maximum likelihood (ML), and Bayesian analyses to the concatenated dataset (ITS + nrLSU + rpb2). The mean character difference approach was utilized to create a phenetic cladogram through morphometric analysis. Our sample sequence grouped together with Laetiporus zonatus showing significant support values of 87% for MP, 98% for ML and 1.0 for Bayesian analyses. The morphological data matrix showed a high degree of similarity (Bray-curtis similarity = 0.925, Euclidean distance = 3.81) between our specimen and L. zonatus. Our study also provides habitat characteristics and in vitro cultural characteristics of the isolates. Laetiporus zonatus is characterized by yellow pileal surface, become pale buff to creamy when dry and whitish cream pore surface, distinctly zonate, radially furrowed upper surface and undulating white margin, 2-3 pores mm-1, ellipsoid to ovoid basidiospores (5.6–8.7 × 4.2–5.9 μm) with Q value of 1.16-1.55 and is found exclusively on Quercus spp. in temperate forests.

References

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. Journal of Molecular Biology 215(3):403‒410. https://doi.org/10.1016/S0022-2836(05)80360-2

Banik MT (1999) Incompatibility between Laetiporus cincinnatus and L. sulphureus in culture. Mycotaxon 70:461‒469.

Banik MT, Burdsall Jr HH (2000) Incompatibility groups among North American populations of Laetiporus sulphureus sensu lato. Mycologia 92(4):649‒655. https://doi.org/10.1080/00275514.2000.12061205

Banik MT, Lindner DL, Ortiz-Santana B, Lodge DJ (2012) A new species of Laetiporus (Basidiomycota, Polyporales) from the Caribbean basin. Kurtziana 37(1):15‒21.

Banik MT, Lindner DL, Ota Y, Hattori T (2010) Relationships among North American and Japanese Laetiporus isolates inferred from molecular phylogenetics and single-spore incompatibility reactions. Mycologia 102:911(4):911‒917. https://doi.org/10.3852/09-044

Burdsall Jr HH, Banik MT (2001) The genus Laetiporus in North America. Harvard Papers in Botany 6(1):43‒55.

Campi MG, Azevedo-Olivera C, Costa-Rezende D, Cano YM, Morera G, Urcelay C, Drechsler-Santos ER, Robledo GL (2022). What are the Laetiporus species present in southern South America? Lilloa 20:193‒218. https://doi.org/10.30550/j.lil/2022.59.S/2022.09.19

Chernomor O, Von Haeseler A, Minh BQ (2016) Terrace aware data structure for phylogenomic inference from supermatrices. Systematic Biology 65(6):997‒1008. https://doi.org/10.1093/sysbio/syw037

Dai YC, Cui BK, Yuan HS, Li BD (2007) Pathogenic wood‐decaying fungi in China. Forest Pathology 37(2):105‒120. https://doi.org/10.1111/j.1439-0329.2007.00485.x

Darriba D, Taboada GL, Doallo R, Posada D (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature methods 9(8):772‒772. https://doi.org/10.1038/nmeth.2109

Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for basidiomycetes‐application to the identification of mycorrhizae and rusts. Molecular Ecology 2(2):113‒118. https://doi.org/10.1111/j.1365-294X.1993.tb00005.x

Gargano ML, Zervakis GI, Isikhuemhen OS, Venturella G, Calvo R, Giammanco A, Fasciana T, Ferraro V (2020) Ecology, phylogeny, and potential nutritional and medicinal value of a rare white “Maitake” collected in a mediterranean forest. Diversity 12(6):230. https://doi.org/10.3390/d12060230

Gilbertson RL (1981) North American wood-rotting fungi that cause brown rots [Polyporaceae, Tremellales, Aphyllophorales and Agaricales. Mycotaxon 12(2):372‒416.

Gilbertson RL, Ryvarden L (1986) North American Polypores, Vol I. Abortiporus-Lindtneria. Fungiflora A/S, Oslo, Norway.

Hall T, Biosciences I, Carlsbad CJ (2011) BioEdit: an important software for molecular biology. GERF Bulletin of Biosciences 2(1):60‒61.

Han ML, Chen YY, Shen LL, Song J, Vlasák J, Dai YC, Cui BK (2016). Taxonomy and phylogeny of the brown-rot fungi: Fomitopsis and its related genera. Fungal Diversity 80:343‒373. https://doi.org/10.1007/s13225-016-0364-y

He MQ, Zhao RL, Hyde KD, Begerow D, Kemler M, Yurkov A, McKenzie EH, Raspé O, Kakishima M, Sánchez-Ramírez S, et al. (2019) Notes, outline and divergence times of Basidiomycota. Fungal Diversity 99:105–367. https://doi.org/10.1007/s13225-019-00435-4

Hibbett DS, Donoghue MJ (2001) Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in homobasidiomycetes. Systematic Biology 50(2):215‒242.

Hoang DT, Chernomor O, Von Haeseler A, Minh BQ, Vinh LS (2018) UFBoot2: improving the ultrafast bootstrap approximation. Molecular Biology and Evolution 35(2):518‒522. https://doi.org/10.1093/molbev/msx281

Ji X, Zhou JL, Song CG, Xu TM, Wu DM, Cui BK (2022) Taxonomy, phylogeny and divergence times of Polyporus (Basidiomycota) and related genera. Mycosphere 13(1):1‒52. https://doi.org/10.5943/mycosphere/13/1/1

Justo A, Hibbett DS (2011) Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five–marker dataset. Taxon 60(6):1567‒1583. https://doi.org/10.1002/tax.606003

Justo A, Miettinen O, Floudas D, Ortiz-Santana B, Sjökvist A, Lindner D, Nakasone K, Niemelä T, Larsson KH, Ryvarden L, Hibbett DS (2017) A revised family-level classification of the Polyporales (Basidiomycota). Fungal Biology 121(9):798‒824. https://doi.org/10.1016/j.funbio.2017.05.010

Katoh K, Rozewicki J, Yamada KD (2019) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20(4):1160‒1166. https://doi.org/10.1093/bib/bbx108

Khatua S, Ghosh S, Acharya K (2017) Laetiporus sulphureus (Bull.: Fr.) Murr. as food as medicine. Pharmacognosy Journal 9(6):1‒15. https://doi.org/10.5530/pj.2017.6s.151

Lindner DL, Banik MT (2008) Molecular phylogeny of Laetiporus and other brown rot polypore genera in North America. Mycologia 100(3):417‒430. https://doi.org/10.3852/07-124R2

Lindner DL, Banik MT (2011) Intragenomic variation in the ITS rDNA region obscures phylogenetic relationships and inflates estimates of operational taxonomic units in genus Laetiporus. Mycologia 103(4):731‒740. https://doi.org/10.3852/10-331

Liu YJ, Whelen S, Hall BD (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16(12):1799‒1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092

Martinez M, Alvarez ST, Campi MG, Bravo JA, Vila JL (2015) Ergosterol from the mushroom Laetiporus sp.: isolation and structural characterization. Revista Boliviana de Química 32(4):90‒94.

Moncalvo JM, Lutzoni FM, Rehner SA, Johnson J, Vilgalys R (2000). Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Systematic Biology 49(2):278‒305. https://doi.org/10.1093/sysbio/49.2.278

Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Research 8(19):4321‒4325. https://doi.org/10.1093/nar/8.19.4321

Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ (2015) IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32(1):268‒274. https://doi.org/10.1093/molbev/msu300

Nilsson RH, Tedersoo L, Abarenkov K, Ryberg K, Kristiansson E, Hartmann M, Schoch CL, Nylarden JAA, Bergsten J, Porter TM, et al. (2012) Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences. MycoKeys 4:37‒63. https://doi.org/10.3897/mycokeys.4.3606

Ortiz-Santana B, Lindner DL, Miettinen O, Justo A, Hibbett DS (2013) A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales). Mycologia 105(6):1391‒1411. https://doi.org/10.3852/13-051

Ota Y, Hattori T (2008). Relationships among three Japanese Laetiporus taxa based on phylogenetic analysis and incompatibility tests. Mycoscience 49(3):168‒177. https://doi.org/10.1007/S10267-007-0403-3

Ota Y, Hattori T, Banik MT, Hagedorn G, Sotome K, Tokuda S, Abe Y (2009) The genus Laetiporus (Basidiomycota, Polyporales) in East. Asia Mycological Research 113(11):1283‒1300. https://doi.org/10.1016/j.mycres.2009.08.014

Paez CA, Kraisitudomsook N, Smith JA, Loyd AL, Lindner DL, Smith ME (2022). Revising the taxonomic placement of Laetiporus persicinus within the Laetiporaceae. Mycologia 19:1-5. https://doi.org/10.1080/00275514.2022.2139144

Peintner U, Kuhnert-Finkernagel R, Wille V, Biasioli F, Shiryaev A, Perini C (2019) How to resolve cryptic species of polypores: an example in Fomes. IMA Fungus 10(1):17. https://doi.org/10.1186/s43008-019-0016-4

Petersen JH (1996) Farvekort. The Danish Mycological Society’s Colour-Chart. Foreningen Til Svampekundskabens Fremme, Greve: 6.

Pires RM, Motato-Vásquez V, Mello Gugliotta AD (2016). A new species of Laetiporus (Basidiomycota) and occurrence of L. gilbertsonii Burds. in Brazil. Nova Hedwigia 102(3/4):477‒90.

Raja HA, Baker TR, Little JG, Oberlies NH (2017) DNA barcoding for identification of consumer-relevant mushrooms: A partial solution for product certification? Food Chemistry 214:383‒392. https://doi.org/10.1016/j.foodchem.2016.07.052

Rogers SO, Holdenrieder O, Sieber TN (1999) Intraspecific comparisons of Laetiporus sulphureus isolates from broadleaf and coniferous trees in Europe. Mycological Research 103(10):1245‒1251. https://doi.org/10.1017/S0953756299008564

Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19(12):1572‒1574. https://doi.org/10.1093/bioinformatics/btg180

Ryvarden L (1991). Genera of polypores. Nomenclature and taxonomy. Synopsis Fungorum 5:1‒363.

Saba E, Son Y, Jeon BR, Kim SE, Lee IK, Yun BS, Rhee MH (2015) Acetyl eburicoic acid from Laetiporus sulphureus var. miniatus suppresses inflammation in murine macrophage Mycobiology 43(2):131‒136. https://doi.org/10.5941/MYCO.2015.43.2.131

Schoch CL, Robbertse B, Robert V, Vu D, Cardinali G, Irinyi L, Meyer W, Nilsson RH, Hughes K, Miller AN, et al. (2014) Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi. Database 2014:bau061. https://doi.org/10.1093/database/bau061

Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W, Bolchacova E, Voigt K, Crous PW, et al. (2012). Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences 109(16):6241‒6246. https://doi.org/10.1073/pnas.1117018109

Shen Q, Geiser DM, Royse DJ (2002) Molecular phylogenetic analysis of Grifola frondosa (maitake) reveals a species partition separating eastern North American and Asian isolates. Mycologia 94(3):472‒482. https://doi.org/10.1080/15572536.2003.11833212

Song J, Chen Y, Cui B, Liu H, Wang Y (2014) Morphological and molecular evidence for two new species of Laetiporus (Basidiomycota, Polyporales) from southwestern China. Mycologia 106(5):1039‒1050. https://doi.org/10.3852/13-402

Song J, Cui BK (2017) Phylogeny, divergence time and historical biogeography of Laetiporus (Basidiomycota, Polyporales). BMC Evolutionary Biology 17(1):102. https://doi.org/10.1186/s12862-017-0948-5

Song J, Sun YF, Ji X, Dai YC, Cui BK (2018) Phylogeny and taxonomy of Laetiporus (Basidiomycota, Polyporales) with descriptions of two new species from western China. MycoKeys 37:57‒71. https://doi.org/10.3897/mycokeys.37.26016

Stalpers JA (1978) Identification of wood-inhabiting fungi in pure culture. Studies in Mycology 16:1‒248.

Stefanova P, Brazkova M, Angelova G (2022) Comparative study of DNA extraction methods for identification of medicinal mushrooms. BIO Web of Conferences 45:02007. https://doi.org/10.1051/bioconf/20224502007

Stirling D (2003) DNA extraction from fungi, yeast, and bacteria. In: PCR protocols (Bartlett JMS, Stirling D, eds), Methods in Molecular Biology, vol 226. Humana press, Totowa, NJ, pp 53‒54. https://doi.org/10.1385/1-59259-384-4:53

Swofford DL (2002) PAUP*: Phylogenetic Analysis Using Parsimony (* and Other Methods). 4.0b10. Sinauer Associates, Inc., Sunderland, Massachusetts. http://paup.csit.fsu.edu/

Tomsovsky M, Jankovsky L (2008) Validation and typification of Laetiporus montanus. Mycotaxon 106:289‒295.

Tsujikawa K, Kanamori T, Iwata Y, Ohmae Y, Sugita R, Inoue H, Kishi T (2003) Morphological and chemical analysis of magic mushrooms in Japan. Forensic Science International 138(1):85-90. https://doi.org/10.1016/j.forsciint.2003.08.009

Turkoglu A, Duru ME, Mercan N, Kivrak I, Gezer K (2007) Antioxidant and antimicrobial activities of Laetiporus sulphureus (Bull.) Murrill. Food Chemistry 101(1):267‒273. https://doi.org/10.1016/j.foodchem.2006.01.025

Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172(8):4238‒4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990

Virginia PC, Catalin T (2013) Description of the culture characteristics of some lignicolous basidiomycetes species grown on three synthetic media. Journal of Plant Development 20:105‒114.

White TJ, Bruns T, Lee SJWT, Taylor J, Innis MA, Gelfand DH, Sninsky JJ (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: a guide to methods and applications (Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds). Academic press, New York, pp 315‒322. http://dx.doi.org/10.1016/B978-0-12-372180-8.50042-1

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Published

2023-08-02

How to Cite

Hussain, S., Nisar, M., Sher, H., Zahoor, M., & Nazir, N. (2023). Laetiporus zonatus: an addition to edible polypore fungi in Pakistan. Italian Journal of Mycology, 52(1), 126–143. https://doi.org/10.6092/issn.2531-7342/16437

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