Isolation, characterization and pathogenicity of fungal pathogens from indigenous postharvest fruits in Akwa Ibom state, Nigeria

Authors

  • Ofon Mbuk Divine-Anthony Department of Microbiology, University of Uyo, Uyo, Akwa Ibom State, Nigeria
  • Anthony Ayodeji Adegoke Department of Microbiology, University of Uyo, Uyo, Akwa Ibom State, Nigeria
  • Olusola T. Oduoye Biotechnology Department, National Centre for Genetic Resources and Biotechnology, Ibadan, Nigeria
  • Oghenerobor B. Akpor Department of Biological Sciences, Afe Babalola University, Ado-Ekiti, Ekiti State, Nigeria

DOI:

https://doi.org/10.6092/issn.2531-7342/16813

Keywords:

Fungal pathogens, fungal rot, phylogenetic relationship, diseased fruits, molecular identification

Abstract

The study investigated fungal pathogens associated with spoilage of five indigenous fruits (Persia americana, Citrus sinensis, Carica papaya, Annona muricata and Solanum lycopersicum) in Akwa Ibom State, Nigeria. Diseased fruit samples were purchased from nine markets located in three senatorial districts of the State. The phenotypic and genotypic identifications of the fungal pathogens isolated from spoilt fruit samples were carried out using standard cultural, morphological and molecular methods, respectively. The phylogenetic relationship among the fungal species was also constructed using neighbor-joining phylogenetic tree generated based on modified Rogers' genetic distance matrix. The fourteen fungal genera identified (and classified into twenty-two species) were Talaromyces, Lasiodiplodia, Trichoderma, Penicillium, Pichia, Rhizopus, Aspergillus, Fusarium, Moniliella, Mucor, Geotrichum, Candida, Absidia and Purpureocillium. Pathogenicity tests revealed that the fungal isolates were able to cause rots with a range of severity. The most rapid rots were caused by Rhizopus oligosporous, Pichia kudriavzevii and Aspergillus niger within 24 h, while Aspergillus aculeatus and Moniliella suaveolens were slower in initiating rots with earliest being after 48 h. The identification of fungi related with fruit rots and data coming from pathogenicity test are crucial information in order to plan and to apply control strategies during postharvest storage.

References

Adegoke AA, Ikott WE, Okoh AI (2022) Carbapenem resistance associated with coliuria among outpatient and hospitalised urology patients. New Microbes New Infection 48:101019. https://doi.org/10.1016/j.nmni.2022.101019

Adegoke AA, Okoh AI (2011) The in vitro effect of vancomycin on multidrug resistant Staphylococcus aureus from hospital currency notes. African Journal of Microbiological Research 5(14):1881–1887.

Adegoke AA, Stenstrom TA (2019) Septic systems. In: Global Water Pathogen Project (Rose JB, Jiménez-Cisneros B, eds), Part 4 Management of Risk from Excreta and Wastewater (Mihelcic JR, Verbyla ME, eds). Michigan State University, East Lansing, MI, UNESCO. https://doi.org/10.14321/waterpathogens.59

Adeoye IB, Odeleye OM, Babalola SO, Afolayan SO (2009) Economic analysis of tomato losses in Ibadan metropolis, Oyo State, Nigeria. African Journal of Basic & Applied Sciences 1(5–6):87–92.

Agbabiaka TO, Saliu BK, Sule IO, Oyeyiola GP, Odedina GF (2015) Microbial deterioration of tomato sold in three popular markets in Ilorin, Kwara State. Nigeria. Fountain Journal of Natural Applied Sciences 4(1):10-18. https://doi.org/10.53704/fujnas.v4i1.54

Agrios GN (2005) Plant pathology, fifth edition. Elsevier Academia Press, San Diego, CA, USA.

Al-Saad LA, Al-Zaalan AR (2019) Evaluating the efficiency of ethanol precipitation method in purification of gDNA and PCR product. Basrah Journal of Agricultural Sciences 32(Spec Issue):276–281. https://doi.org/10.37077/25200860.2019.174

Awe S (2011) Production and microbiology of pawpaw (Carica papaya L.) wine. Current Research Journal in Biological Science 3(5):443–447.

Balali GI, Yar DD, Dela VGA, Adjei-Kusi P (2020) Microbial contamination, an increasing threat to the consumption of fresh fruits and vegetables in today’s world. International Journal of Microbiology 3029295:1–13. https://doi.org/10.1155/2020/3029295

Barnett HL, Hunter BB (1987) Illustrated genera of imperfect fungi fourth edition. Macmillan Publishing Company, New York, USA.

Dean R, Van Kan JAL, Pretorius ZA, Hammond-Kosack KE, Di Pietro A, Spanu PD, Rudd JJ, Dickman M, KahMann R, Ellis J, Foster GD (2012) The Top 10 fungal pathogens in molecular plant pathology. Molecular Plant Pathology 13:414–430. https://doi.org/10.1111/j.1364-3703.2011.00783.x

Denman S, Crous PW, Taylor JE, Kang JC, Pascoe IG, Wingfield MJ (2000) An overview of the taxonomic history of Botryosphaeria, and a re-evaluation of its anamorphs based on morphology and ITS rDNA phylogeny. Studies in Mycology 45(1):129–140.

Drenth A, Guest DI (2016) Fungal and oomycete diseases of tropical tree fruit crops. Annual Review of Phytopathology 54:373–395. https://doi.org/10.1146/annurev-phyto-080615-095944

Egbuta AM, Mwanza M, Babalola OO (2016) A review of the ubiquity of ascomycetes filamentous fungi in relation to their economic and medical importance. Advances in Microbiology 6:1140–1158. https://doi.org/10.4236/aim.2016.614103

Eno AE, Itam EH, Konya RS (2000) Blood pressure depression by the fruit juice of Carica papaya in renal and DOCA induced hypertension in the rat. Phytotherapy Research 14(4):235–239. https://doi.org/10.1002/1099-1573(200006)14:4<235::AID-PTR574>3.0.CO;2-G

Etebu I, Nwauzoma AB (2000) A review on sweet orange (Citrus sinensis): health, diseases and managements. American Journal of Research Communication 2(2):33–70.

Hawksworth DL (2004) Fungal diversity and its implications for genetic resource collections. Studies in Mycology 50(1):9–18.

Isitua CC, Ibeh IN (2010) Novel method of wine production from banana (Musa acuminata) and pineapple (Ananascosmosus) waste. African Journal of Biotechnology 9(44):7521–7524. https://doi.org/10.5897/AJB10.999

Iweala EEJ, Uhegbu FO, Ogu GN (2010) Preliminary in vitro antisickilng properties of crude juice extracts of Persia americana, Citrus sinensis, Carica papaya and ciklavit. African Journal of Traditional Complementary and Alternative Medicine 7(2):113–117. https://doi.org/10.4314/ajtcam.v7i2.50867

Jimenez-Garcia SN, Garcia-Mier L, Garcia-Trejo JF, Ramirez-Gomez XS, Guevara-Gonzalez RG, Feregrino-Perez AA (2018) Fusarium mycotoxins and metabolites that modulate their production. In: Fusarium - Plant Diseases, Pathogen Diversity, Genetic Diversity, Resistance and Molecular Markers (Askun T, ed). IntechOpen, London, UK. https://doi.org/10.5772/intechopen.72874.

Kamilari E, Stanton C, Reen FJ, Ross RP (2023) Uncovering the biotechnological importance of Geotrichum candidum. Foods 12(6):1124. https://doi.org/10.3390/foods12061124

Kebede G, Kabeto EG, Dagnew A (2021) Distribution and identification of anthracnose of papaya caused by Colletotrichum gloeosporioides in the central Rift Valley of Ethiopia. Plant Protection 5(3):139–147. https://doi.org/10.33804/pp.005.03.3917

Kiaya V (2014) Post-harvest losses and strategies to reduce them. Technical paper on postharvest losses. ACF International.

Leslie JF, Summerell BA (2006) The Fusarium laboratory manual. Blackwell Publishing, Hoboken. https://doi.org/10.1002/9780470278376

Li B, Zong Y, Du Z, Chen Y, Zhang Z, Qin G, Zhao W, Tian S (2015) Genomic characterization reveals insights into patulin biosynthesis and pathogenicity in Penicillium species. Molecular Plant-Microbe Interaction 28(6):635–647. https://doi.org/10.1094/MPMI-12-14-0398-FI

Moss MO (2008) Fungi, quality and safety issues in fresh fruits and vegetables. Journal of Applied Microbiology 104(5):1239–1243. https://doi.org/10.1111/j.1365-2672.2007.03705.x

Muniz CR, Freire FCO, Viana FMP, Cardoso JE, Cooke P, Wood D, Guedes MIF (2011) Colonization of cashew plants by Lasiodiplodia theobromae: microscopical features. Micron 42(5):419–428. https://doi.org/10.1016/j.micron.2010.12.003

Naiho AO, Okonkwor BC, Okoukwu C (2015) Anti-sickling and membrane stabilizing effects of Carica papaya leaf extract. African Journal of Biochemistry Research 3(4):102–110.

Nakamura Y, Miyoshi N (2006) Cell death induction by isothiocyanates and their underlying molecular mechanisms. Biofactors 26(2):123–134. https://doi.org/10.1002/biof.5520260203

Nucci M, Anaissie E (2007) Fusarium infections in immunocompromised patients. Clinical Microbiological Review 20:695–704. https://doi.org/10.1128/CMR.00014-07

Nurain IO, Bewaji CO, Johnson JS, Davenport RD, Zhang Y (2016) Potential of three ethnomedicinal plants as antisickling agents. Molecular Pharmaceutics 14(1):172–182. https://doi.org/10.1021/acs.molpharmaceut.6b00767

Nweke CN, Ibiam OFA (2012) Pre and post-harvest fungi associated with the soft rot of Annona muricata, and their effects on the pulp. American Journal of Food and Nutrition 2(4):78–85.

Nzima B, Adegoke AA, Ofon UA, Al-Dahmoshi HOM, Saki M, Ndubuisi-Nnaji UU, Inyang CU (2020) Resistotyping and extended-spectrum beta-lactamase genes among Escherichia coli from wastewater treatment plants and recipient surface water for reuse in South Africa. New Microbes New Infection 38:100803. https://doi.org/10.1016/j.nmni.2020.100803

Samson RA, Hoekstra ES, Van-Ooerschot CAN (1988) Introduction to foodborne fungi. 2nd edition, Centraal bureau Voor Schimmelcultures, The Netherlands.

Sandlin CM, Ferrin DM, (1992) Root rot of Brachychiton populneus seedlings caused by Lasiodiplodia theobromae. Plant Disease 76(9):883–885.

Sanzani SM, Reverberi M, Geisen R (2016) Mycotoxins in harvested fruits and vegetables: insights in producing fungi, biological role, conducive conditions, and tools to manage postharvest contamination. Postharvest Biological Technology 122:95–105. https://doi.org/10.1016/j.postharvbio.2016.07.003

Spolti P, Valdebenito-Sanhueza RM, Laranjeira FF, Del Ponte EM (2012) Comparative spatial analysis of the sooty blotch/flyspeck disease complex, bull’s eye and bitter rots of apples. Plant Pathology 61:271–280. https://doi.org/10.1111/j.1365-3059.2011.02524.x

Sutton TB, Aldwinckle HS, Agnello AM, Walgenbach JF (2014) Compendium of apple and pear diseases and pests. Second edition. APS Press, St. Paul, Minnesota, USA.

Tam EWT, Chen JHK, Lau ECL, Ngan AHY, Fung KSC, Lee K, Lam C, Yuen K, Lau SKP, Woo PCY (2014) Misidentification of Aspergillus nomius and A. tamarii as A. flavus: characterization of internal transcribed spacer, β-Tubulin and calmodulin gene sequencings metabolic fingerprinting and matrix – assisted laser desorption ionization – time of flight mass spectrometry. Journal of Clinical Microbiology 52(4):1153–1160. https://doi.org/10.1128/JCM.03258-13

Tamura K, Stecher G, Kumar S (2021) MEGA11: Molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution 38:3022-3027. https://doi.org/10.1093/molbev/msab120

Tian S, Torres R, Ballester AR, Li B, Vilanova L, Gonzalez-Candelas L (2016) Molecular aspects in pathogen-fruit interactions: virulence and resistance. Postharvest Biological Technology 122:11–12. https://doi.org/10.1016/j.postharvbio.2016.04.018

Triest D, Hendrickx M (2016) Postharvest disease of banana caused by Fusarium musae: a public health concern? Plos Pathogen 12(11):e1005940. https://doi.org/10.1371/journal.ppat.1005940

Tripathi AN, Singh D, Pandey KK, Singh J (2021) Postharvest diseases of leguminous vegetable crops and their management. In: Post-Harvest Handling and Diseases of Horticulture Produce (Singh D, Sharma RR, Devappa V, Kamil D, eds), 1st ed. CRC Press, London, UK, pp 387–396.

Udoh IP, Eleazar CI, Ogeneh BO, Ohanu ME (2015) Studies on fungi responsible for the spoilage/deterioration of some edible fruits and vegetables. Advances in Microbiology 5:285–290. https://doi.org//10.4236/aim.2015.54027

Vongphachanh P, Saksirirat W, Seapaisan S (2016) Occurrence and characterization of Rhizoctonia spp., causal agents of sheath diseases isolated from rice in Lao PDR. Journal of Pure and Applied Microbiology 10(3):1763–1771. JPAM.10.3.10

Vose PB (1980) Nuclear techniques in plant science. In: Introduction to Nuclear Techniques in Agronomy and Plant Biology (Vose PB, ed). Pergamon International Library, Elmsford, New York, USA, pp 298–327.

White TJ, Bruns T, Lee SJWT, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: a guide to methods and applications (Innis MA, Gelfand DH, Sninsky J, White TJ, eds). Academic Press, San Diego, CA, pp 315–322. http://dx.doi.org/10.1016/B978-0-12-372180-8.50042-1

Whitehead SR, Tiramani J, Bowers MD (2015) Iridoid glycosides from fruits reduce the growth of fungi associated with fruit rot. Journal of Plant Ecology 9(3):357–366. https://doi.org/10.1093/jpe/rtv063

Willey JM, Sherwood LM, Woolverton CJ (2008) Prescott, Harley and Klein’s Microbiology. McGraw-Hill, New York, USA.

Yahia EM, García-Solís P, Maldonado Celis ME (2019) Contribution of fruits and vegetables to human nutrition and health. In: Postharvest Physiology and Biochemistry of Fruits and Vegetables (Yahia EM, ed). Elsevier, Amsterdam, Netherlands, pp. 19–45. https://doi.org/10.1016/B978-0-12-813278-4.00002-6

Zeilinger S, Gupta VK, Dahms TES, Silva RN, Singh HB, Upadhyay RS, Gomes EV, Tsui CK, Nayak SC (2016) Friends or foes? Emerging insights from fungal interactions with plants. FEMS Microbiology Review 40:182–207. https://doi.org/10.1093/femsre/fuv045

Downloads

Published

2024-03-18

How to Cite

Divine-Anthony, O. M., Adegoke, A. A., Oduoye, O. T., & Akpor, O. B. (2024). Isolation, characterization and pathogenicity of fungal pathogens from indigenous postharvest fruits in Akwa Ibom state, Nigeria. Italian Journal of Mycology, 53(1), 29–44. https://doi.org/10.6092/issn.2531-7342/16813

Issue

Section

Articles